Expression Data

Here is a description of the custom expression microarrays developed by the Arborea II and SMarTForests as well as a brief description of the experiments in which they were used.

Microarray	Description	Accession	Platform	Publication
Spruce11k cDNA microarray	Spotted cDNA, 10,400 nonredundant sequences, printed as double, side-by-side spots	GPL10754	GEO	Pavy et al. 2008
Spruce32k Oligo microarray	Spotted oligonucleotide, 70 bp, 31,604 White and Sitka spruce gene-probes	GPL15033	GEO	Raherison et al. 2012

Microarray Experiments

Title	Array format	Accession	Platform	Publication
Analysis of recalcitrance to induction of somatic embryogenesis, shoot primordia, adult trees, Picea glauca	Spruce32k	GSE46977	GEO	Rutledge et al. 2013
Evaluation of differential expression in the vascular transcriptome among Picea spp.	Spruce32k	GSE35922	GEO	Raherison et al. 2012
Interspecies Pinaceae comparison experiment (7 spp.)	Spruce32k	GSE35847	GEO	Raherison et al. 2012
PiceaGenExpress database of transcription profiles (8 tissues)	Spruce32k	GSE35624	GEO	Raherison et al. 2012
Direct measurement of heritable gene expression within single individuals from wild populations	Spruce32k	GSE35337	GEO	Verta et al. 2013
Transcription profiling of Picea glauca xylem and phloem	Spruce11k	E-MEXP-1489	ArrayExpress	Pavy et al. 2008
Molecular events of apical bud formation in white spruce	Spruce11k	GSE23519	GEO	El Kayal et al. 2011
Integrated transcriptomic and proteomic profiling of white spruce stems during the transition from active growth to dormancy	Spruce11k	GSE31090	GEO	Galindo González et al. 2012

 

RNAseq gene expression

RNAseq	Description	Accession	Platform	Publication
Bark	Bark tissue from PG29 was extracted for total RNA and sequenced	SRX318118	Illumina Hi Seq	Warren et al. 2015
Flushing Bud	Flushing bud needles from PG29 were extracted for total RNA and sequenced	SRX318119	Illumina Hi Seq	Warren et al. 2015
Mature Needle	Mature needles from PG29 were extracted for total RNA and sequenced	SRX318120	Illumina Hi Seq	Warren et al. 2015
Xylem	Xylem tissues from PG29 were extracted for total RNA and sequenced	SRX318121	Illumina Hi Seq	Warren et al. 2015
Young buds	Young buds from PG29 were extracted for total RNA and sequenced	SRX318122	Illumina Hi Seq	Warren et al. 2015
Seedling	Seedlings from PG29 were extracted for total RNA and sequenced	SRX318123	Illumina Hi Seq	Warren et al. 2015
Embryo	Embryos from PG29 were extracted for total RNA and sequenced	SRX318124	Illumina Hi Seq	Warren et al. 2015
Megagametophytes	Megagametophytes from PG29 were extracted for total RNA and sequenced	SRX318125	Illumina Hi Seq	Warren et al. 2015